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41 lines
1 KiB
YAML
41 lines
1 KiB
YAML
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name: cnvpytor_callcnvs
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description: command line tool for calling CNVs in whole genome sequencing data
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- CNV calling
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tools:
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- cnvpytor:
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description: calling CNVs using read depth
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homepage: https://github.com/abyzovlab/CNVpytor
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documentation: https://github.com/abyzovlab/CNVpytor
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tool_dev_url: https://github.com/abyzovlab/CNVpytor
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doi: "10.1101/2021.01.27.428472v1"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test']
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- pytor:
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type: file
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description: cnvpytor root file
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pattern: "*.{pytor}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- cnvs:
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type: file
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description: file containing identified copy numer variations
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pattern: "*.{tsv}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@sima-r"
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