nf-core_modules/modules/racon/meta.yml

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name: racon
description: Consensus module for raw de novo DNA assembly of long uncorrected reads
keywords:
- assembly
- pacbio
- nanopore
- polish
tools:
- racon:
description: Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
homepage: https://github.com/lbcb-sci/racon
documentation: https://github.com/lbcb-sci/racon
tool_dev_url: https://github.com/lbcb-sci/racon
doi: https://doi.org/10.1101/gr.214270.116
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: List of input FastQ files. Racon expects single end reads
pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
- assembly:
type: file
description: Genome assembly to be improved
pattern: "*.{fasta,fa}"
- paf:
type: file
description: Alignment in PAF format
pattern: "*.paf"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- improved_assembly:
type: file
description: Improved genome assembly
pattern: "*_assembly_consensus.fasta.gz"
authors:
- "@avantonder"