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nf-core_modules/tests/modules/bcftools/concat/test.yml

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Added optional input of index files to bcftools/concat
2022-05-31 15:15:58 +02:00
- name: bcftools concat test_bcftools_concat_tbi
command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_tbi -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/concat/nextflow.config
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-08-10 15:10:27 +02:00
tags:
Added optional input of index files to bcftools/concat
2022-05-31 15:15:58 +02:00
- bcftools
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-08-10 15:10:27 +02:00
- bcftools/concat
Added optional input of index files to bcftools/concat
2022-05-31 15:15:58 +02:00
files:
- path: output/bcftools/test3.vcf.gz
Bump tool versions for modules required in viralrecon (#1859) * Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums
2022-07-07 14:48:04 +01:00
md5sum: 1f6a3ffdffbc56e0bc1b184e70ee88df
Added optional input of index files to bcftools/concat
2022-05-31 15:15:58 +02:00
- name: bcftools concat test_bcftools_concat_no_tbi
command: nextflow run ./tests/modules/bcftools/concat -entry test_bcftools_concat_no_tbi -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/concat/nextflow.config
tags:
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-08-10 15:10:27 +02:00
- bcftools
Added optional input of index files to bcftools/concat
2022-05-31 15:15:58 +02:00
- bcftools/concat
Add bcftools/concat module. (#641) * draft for bcftools modules [ci skip] * initial test for bcftools concat * Update the params for testing * fix tests * Accomodate code review [ci skip] Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update the meta file and open PR for review * Update the keyword * Update the tags for module [ci skip[ * add threads Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-08-10 15:10:27 +02:00
files:
- path: output/bcftools/test3.vcf.gz
Bump tool versions for modules required in viralrecon (#1859) * Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums
2022-07-07 14:48:04 +01:00
md5sum: 1f6a3ffdffbc56e0bc1b184e70ee88df
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