nf-core_modules/tests/software/samtools/fastq/main.nf

14 lines
417 B
Text
Raw Normal View History

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SAMTOOLS_FASTQ } from '../../../../software/samtools/fastq/main.nf' addParams( options: [:] )
workflow test_samtools_fastq {
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true)
]
SAMTOOLS_FASTQ ( input )
}