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19 lines
632 B
Text
19 lines
632 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GATK4_GATHERPILEUPSUMMARIES } from '../../../../modules/gatk4/gatherpileupsummaries/main.nf'
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workflow test_gatk4_gatherpileupsummaries {
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input = [
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[ id:'test', single_end:false ], // meta map
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[file(params.test_data['homo_sapiens']['illumina']['test_pileups_table'], checkIfExists: true)]
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//file(params.test_data['homo_sapiens']['illumina']['test_pileups_table'], checkIfExists: true)]
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]
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dict = file(params.test_data['homo_sapiens']['genome']['genome_21_dict'], checkIfExists: true)
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GATK4_GATHERPILEUPSUMMARIES ( input, dict )
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}
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