mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
37 lines
1 KiB
YAML
37 lines
1 KiB
YAML
|
name: bismark_genome_preparation
|
||
|
|
description: |
|
||
|
|
Converts a specified reference genome into two different bisulfite
|
||
|
|
converted versions and indexes them for alignments.
|
||
|
|
keywords:
|
||
|
|
- bismark
|
||
|
|
- 3-letter genome
|
||
|
|
- index
|
||
|
|
- methylation
|
||
|
|
- 5mC
|
||
|
|
- methylseq
|
||
|
|
- bisulphite
|
||
|
|
- fasta
|
||
|
|
tools:
|
||
|
|
- bismark:
|
||
|
|
description: |
|
||
|
|
Bismark is a tool to map bisulfite treated sequencing reads
|
||
|
|
and perform methylation calling in a quick and easy-to-use fashion.
|
||
|
|
homepage: https://github.com/FelixKrueger/Bismark
|
||
|
|
documentation: https://github.com/FelixKrueger/Bismark/tree/master/Docs
|
||
|
|
doi: 10.1093/bioinformatics/btr167
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Input genome fasta file
|
||
|
|
output:
|
||
|
|
- index:
|
||
|
|
type: dir
|
||
|
|
description: Bismark genome index directory
|
||
|
|
pattern: "BismarkIndex"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
authors:
|
||
|
|
- "@phue"
|