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https://github.com/MillironX/nf-core_modules.git
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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
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name: "ultra_index"
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description: uLTRA aligner - A wrapper around minimap2 to improve small exon detection - Index gtf file for reads alignment
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keywords:
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- uLTRA
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- index
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- minimap2
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- long_read
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- isoseq
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- ont
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tools:
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- "ultra":
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description: "Splice aligner of long transcriptomic reads to genome."
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homepage: "https://github.com/ksahlin/uLTRA"
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documentation: "https://github.com/ksahlin/uLTRA"
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tool_dev_url: "https://github.com/ksahlin/uLTRA"
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doi: "10.1093/bioinformatics/btab540"
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licence: "['GNU GPLV3']"
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input:
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- fasta:
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type: file
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description: A fasta file of the genome to use as reference for mapping
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pattern: "*.{fasta, fa}"
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- gtf:
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type: file
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description: An annotation file of the reference genome in GTF format
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pattern: "*.gtf"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- pickle:
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type: file
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description: Index files generated by uLTRA index
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pattern: "*.pickle"
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- pickle:
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type: file
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description: database file generated by uLTRA index
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pattern: "*.db"
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authors:
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- "@sguizard"
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