nf-core_modules/modules/ensemblvep/build.sh

29 lines
857 B
Bash
Raw Normal View History

#!/usr/bin/env bash
set -euo pipefail
# Build and push all containers
build_push() {
GENOME=$1
SPECIES=$2
VEP_CACHE_VERSION=$3
VEP_VERSION=$4
docker build \
2022-05-05 10:57:14 +00:00
. \
-t nfcore/vep:${VEP_VERSION}.${GENOME} \
--build-arg GENOME=${GENOME} \
--build-arg SPECIES=${SPECIES} \
--build-arg VEP_CACHE_VERSION=${VEP_CACHE_VERSION} \
--build-arg VEP_VERSION=${VEP_VERSION}
docker push nfcore/vep:${VEP_VERSION}.${GENOME}
}
build_push "GRCh37" "homo_sapiens" "106" "106.1"
build_push "GRCh38" "homo_sapiens" "106" "106.1"
build_push "GRCm38" "mus_musculus" "102" "106.1"
build_push "GRCm39" "mus_musculus" "106" "106.1"
build_push "CanFam3.1" "canis_lupus_familiaris" "104" "106.1"
build_push "WBcel235" "caenorhabditis_elegans" "106" "106.1"