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48 lines
1.1 KiB
YAML
48 lines
1.1 KiB
YAML
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name: "vcf2db"
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description: A tool to create a Gemini-compatible DB file from an annotated VCF
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keywords:
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- vcf2db
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- vcf
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- gemini
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tools:
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- "vcf2db":
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description: "Create a gemini-compatible database from a VCF"
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homepage: "https://github.com/quinlan-lab/vcf2db"
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documentation: "https://github.com/quinlan-lab/vcf2db"
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tool_dev_url: "https://github.com/quinlan-lab/vcf2db"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file
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pattern: "*.vcf.gz"
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- ped:
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type: file
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description: PED file
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pattern: "*.ped"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- db:
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type: file
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description: Gemini-compatible database file
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pattern: "*.db"
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authors:
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- "@nvnieuwk"
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