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nf-core_modules/tests/modules/goat/taxonsearch/test.yml

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2012 bug related to species input in goattaxonsearch module (#2099) * updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 16:58:40 +00:00
- name: goat taxonsearch test_goat_taxonsearch_single_species
command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_single_species -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 14:34:58 +00:00
tags:
- goat/taxonsearch
2012 bug related to species input in goattaxonsearch module (#2099) * updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 16:58:40 +00:00
- goat
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 14:34:58 +00:00
files:
2012 bug related to species input in goattaxonsearch module (#2099) * updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 16:58:40 +00:00
- path: output/goat/test_single_species.tsv
md5sum: ed5b0afc7a6cf2f4b558882c10b35ef7
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 14:34:58 +00:00
- name: goat taxonsearch test_goat_taxonsearch_genus_id
command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_genus_id -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
tags:
- goat/taxonsearch
2012 bug related to species input in goattaxonsearch module (#2099) * updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 16:58:40 +00:00
- goat
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 14:34:58 +00:00
files:
- path: output/goat/test_genus_id.tsv
md5sum: 2cc41abbbc21b4b66f4d5126cfbba2bc
- name: goat taxonsearch test_goat_taxonsearch_species
command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_species -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
tags:
- goat/taxonsearch
2012 bug related to species input in goattaxonsearch module (#2099) * updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 16:58:40 +00:00
- goat
Add module: goat/taxonsearch (#1866) * first commit * single taxon input * added .tsv output * input: single taxon or file with taxon identifiers * updated input and output * removed wrong tool description * added tests * ext.args = '-l -b' * fixed wrong input names * updated test file * Update modules/goat/taxonsearch/main.nf simple version output Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> * removed 'NO_FILE' from input definition * added ! in if statement * optional input: empty list * successful updated test * added test with file * remove blank spaces in include {} * added test with taxa file Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 14:34:58 +00:00
files:
- path: output/goat/test_species.tsv
md5sum: 7f5b36414820bd3ce2bfda06d98e479c
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