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42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
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name: krakentools_kreport2krona
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description: Takes a Kraken report file and prints out a krona-compatible TEXT file
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keywords:
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- kraken
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- krona
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- metagenomics
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- visualization
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tools:
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- krakentools:
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description: KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.
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homepage: https://github.com/jenniferlu717/KrakenTools
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- kreport:
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type: file
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description: Kraken report
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pattern: "*.{txt,kreport}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- krona:
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type: file
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description: Krona text-based input file converted from Kraken report
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pattern: "*.{txt,krona}"
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authors:
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- "@MillironX"
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