nf-core_modules/tests/modules/cat/cat/test.yml

- name: cat unzipped unzipped
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_unzipped_unzipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/test.fasta
      md5sum: f44b33a0e441ad58b2d3700270e2dbe2

- name: cat unzipped unzipped stub
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_unzipped_unzipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config -stub-run
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/test.fasta

- name: cat zipped zipped
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_zipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/test.gz

- name: cat zipped zipped stub
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_zipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config -stub-run
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/test.gz

- name: cat zipped unzipped
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_zipped_unzipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt
      md5sum: c439d3b60e7bc03e8802a451a0d9a5d9

- name: cat zipped unzipped stub
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_zipped_unzipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config -stub-run
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt

- name: cat unzipped zipped
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_unzipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt.gz

- name: cat unzipped zipped stub
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_unzipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config -stub-run
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt.gz

- name: cat one file unzipped zipped
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_one_file_unzipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt.gz

- name: cat one file unzipped zipped stub
  command: nextflow run ./tests/modules/cat/cat -entry test_cat_one_file_unzipped_zipped -c ./tests/config/nextflow.config -c ./tests/modules/cat/cat/nextflow.config -stub-run
  tags:
    - cat
    - cat/cat
  files:
    - path: output/cat/cat.txt.gz