nf-core_modules/modules/vcflib/vcfuniq/meta.yml

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name: vcflib_vcfuniq
description: List unique genotypes. Like GNU uniq, but for VCF records. Remove records which have the same position, ref, and alt as the previous record.
keywords:
- vcf
- uniq
- deduplicate
tools:
- vcflib:
description: Command-line tools for manipulating VCF files
homepage: https://github.com/vcflib/vcflib
documentation: https://github.com/vcflib/vcflib#USAGE
doi: "https://doi.org/10.1101/2021.05.21.445151"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: Compressed VCF file
pattern: "*.vcf.gz"
- tbi:
type: file
description: Index of VCF file
pattern: "*.vcf.gz.tbi"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- vcf:
type: file
description: Compressed VCF file
pattern: "*.vcf.gz"
authors:
- "@drpatelh"