nf-core_modules/modules/tabix/bgzip/meta.yml

name: tabix_bgzip
description: Compresses/decompresses files
keywords:
  - compress
  - decompress
  - bgzip
  - tabix
tools:
  - bgzip:
      description: |
        Bgzip compresses or decompresses files in a similar manner to, and compatible with, gzip.
      homepage: https://www.htslib.org/doc/tabix.html
      documentation: http://www.htslib.org/doc/bgzip.html
      doi: 10.1093/bioinformatics/btp352
      licence: ["MIT"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - input:
      type: file
      description: file to compress or to decompress
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - output:
      type: file
      description: Output compressed/decompressed file
      pattern: "*."
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@joseespinosa"
  - "@drpatelh"
  - "@maxulysse"
chores: replace bcftools/bgzip by tabix/bgzip cf #179 2021-02-16 18:11:36 +00:00			`name: tabix_bgzip`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`description: Compresses/decompresses files`
Adding bcftools_bgzip module 2021-01-30 10:22:25 +00:00			`keywords:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- compress`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`- decompress`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- bgzip`
			`- tabix`
Adding bcftools_bgzip module 2021-01-30 10:22:25 +00:00			`tools:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- bgzip:`
			`description: \|`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`Bgzip compresses or decompresses files in a similar manner to, and compatible with, gzip.`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`homepage: https://www.htslib.org/doc/tabix.html`
			`documentation: http://www.htslib.org/doc/bgzip.html`
			`doi: 10.1093/bioinformatics/btp352`
			`licence: ["MIT"]`
Adding bcftools_bgzip module 2021-01-30 10:22:25 +00:00			`input:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- meta:`
			`type: map`
			`description: \|`
			`Groovy Map containing sample information`
			`e.g. [ id:'test', single_end:false ]`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`- input:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`type: file`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`description: file to compress or to decompress`
Adding bcftools_bgzip module 2021-01-30 10:22:25 +00:00			`output:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- meta:`
			`type: map`
			`description: \|`
			`Groovy Map containing sample information`
			`e.g. [ id:'test', single_end:false ]`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`- output:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`type: file`
add decompress possibilities to bgzip (#1540) * add decompress possibilities to bgzip * spacing 2022-04-20 14:26:56 +00:00			`description: Output compressed/decompressed file`
			`pattern: "*."`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- versions:`
			`type: file`
			`description: File containing software versions`
			`pattern: "versions.yml"`
Adding bcftools_bgzip module 2021-01-30 10:22:25 +00:00			`authors:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- "@joseespinosa"`
			`- "@drpatelh"`
			`- "@maxulysse"`