nf-core_modules/tests/modules/bamutil/trimbam/test.yml

- name: bamutil trimbam test_bamutil_trimbam
  command: nextflow run tests/modules/bamutil/trimbam -entry test_bamutil_trimbam -c tests/config/nextflow.config
  tags:
    - bamutil/trimbam
    - bamutil
  files:
    - path: output/bamutil/test.bam
      md5sum: 9ddd0ecca82f7f3433383f3d1308970e
Add `bamutil/trimbam` (#1060) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add bamUtil trimBam * Update modules/bamutil/trimbam/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/bamutil/trimbam/main.nf * Changes after code-review * YAML lint Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> 2021-11-15 16:44:12 +00:00			`- name: bamutil trimbam test_bamutil_trimbam`
			`command: nextflow run tests/modules/bamutil/trimbam -entry test_bamutil_trimbam -c tests/config/nextflow.config`
			`tags:`
			`- bamutil/trimbam`
			`- bamutil`
			`files:`
			`- path: output/bamutil/test.bam`
			`md5sum: 9ddd0ecca82f7f3433383f3d1308970e`