mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
|
name: snpsift_split
|
||
|
|
description: Splits/Joins VCF(s) file into chromosomes
|
||
|
|
keywords:
|
||
|
|
- split
|
||
|
|
- join
|
||
|
|
- vcf
|
||
|
|
tools:
|
||
|
|
- snpsift:
|
||
|
|
description: SnpSift is a toolbox that allows you to filter and manipulate annotated files
|
||
|
|
homepage: https://pcingola.github.io/SnpEff/ss_introduction/
|
||
|
|
documentation: https://pcingola.github.io/SnpEff/ss_introduction/
|
||
|
|
tool_dev_url: https://github.com/pcingola/SnpEff
|
||
|
|
doi: "10.3389/fgene.2012.00035"
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- vcf:
|
||
|
|
type: file (split) or list of files (join)
|
||
|
|
description: VCF file(s)
|
||
|
|
pattern: "*.{vcf,vcf.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- out_vcfs:
|
||
|
|
type: file
|
||
|
|
description: Split/Joined VCF file(s)
|
||
|
|
pattern: "*.vcf"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@SusiJo"
|
||
|
|
- "@jonasscheid"
|