nf-core_modules/modules/last/mafswap/meta.yml

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name: last_mafswap
description: Reorder alignments in a MAF file
keywords:
- LAST
- reorder
- alignment
- MAF
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ["GPL-3.0-or-later"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- maf:
type: file
description: Multiple Aligment Format (MAF) file, optionally compressed with gzip
pattern: "*.{maf.gz,maf}"
output:
- maf:
type: file
description: Multiple Aligment Format (MAF) file, compressed with gzip
pattern: "*.{maf.gz}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@charles-plessy"