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nf-core_modules/tests/software/salmon/test.yml

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added test data and salmon tests
2021-01-26 14:24:06 +00:00
- name: salmon index
command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_index -c tests/config/nextflow.config
tags:
- salmon
- salmon_index
files:
- path: output/salmon/salmon/refseq.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/versionInfo.json
md5sum: 204865f645102587c4953fccb256797c
- path: output/salmon/salmon/complete_ref_lens.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: f57562f1fca3ae7b133f895ae13c3d08
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/mphf.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 53669a47610e33e031faafd32703b714
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/duplicate_clusters.tsv
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 51b5292e3a874119c0e1aa566e95d70c
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/reflengths.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: f57562f1fca3ae7b133f895ae13c3d08
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/info.json
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 61ff4d3471134c280668355ddd39e99f
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/refAccumLengths.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/ctg_offsets.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 27a76542337df436436e66017f66dd25
added test data and salmon tests
2021-01-26 14:24:06 +00:00
- path: output/salmon/salmon/rank.bin
added test.yml and md5sums
2021-01-26 14:38:56 +00:00
md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
- name: salmon quant paired end
command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_pe -c tests/config/nextflow.confi
tags:
- salmon
- salmon_quant
- salmon_quant_pe
files:
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/libParams/flenDist.txt
md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/libParams/flenDist.txt
md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
- path: output/salmon/test/quant.genes.sf
md5sum: eb3e7b44801a0b3af07c25963927e20d
- path: output/salmon/salmon/ref_indexing.log
md5sum: 1f824b721361da702b5b1b1c3b02be49
- path: output/salmon/salmon/refseq.bin
md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
- path: output/salmon/salmon/versionInfo.json
md5sum: 204865f645102587c4953fccb256797c
- path: output/salmon/salmon/complete_ref_lens.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: output/salmon/salmon/mphf.bin
md5sum: 53669a47610e33e031faafd32703b714
- path: output/salmon/salmon/pre_indexing.log
md5sum: 68f309b5557feb35829b9715b0afad39
- path: output/salmon/salmon/ctable.bin
md5sum: 79c06180158c7ee44fab6672c2b27fbb
- path: output/salmon/salmon/duplicate_clusters.tsv
md5sum: 51b5292e3a874119c0e1aa566e95d70c
- path: output/salmon/salmon/reflengths.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: output/salmon/salmon/info.json
md5sum: 61ff4d3471134c280668355ddd39e99f
- path: output/salmon/salmon/refAccumLengths.bin
md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
- path: output/salmon/salmon/ctg_offsets.bin
md5sum: 27a76542337df436436e66017f66dd25
- path: output/salmon/salmon/rank.bin
md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
- path: output/salmon/salmon/pos.bin
md5sum: 3b2d741929d6842e7818fcaa16f01bdc
- path: output/salmon/salmon/seq.bin
md5sum: 196b06f78c8aa6aa960eb5921288d0f4
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/libParams/flenDist.txt
md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/cmd_info.json
md5sum: 007676e4d79de0809a03e0ea045ed4a1
- path: output/salmon/test/quant.sf
md5sum: addb78e233f248b8f62cae3e217bf689
- path: output/salmon/test/lib_format_counts.json
md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
- path: output/salmon/test/logs/salmon_quant.log
md5sum: f7fe6e71b4ad4232e217db300c29202b
- path: output/salmon/test/aux_info/expected_bias.gz
md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
- path: output/salmon/test/aux_info/observed_bias_3p.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/aux_info/meta_info.json
md5sum: f82491a19755bb1c32d49e9f0e12eebd
- path: output/salmon/test/aux_info/fld.gz
md5sum: 7f342560fea53327f0532623e53052f7
- path: output/salmon/test/aux_info/ambig_info.tsv
md5sum: 950001575c24fb6bc2c7a6848043b126
- path: output/salmon/test/aux_info/observed_bias.gz
md5sum: ef13c06a538e9c34ca9f84212c82f44e
- path: output/salmon/test/libParams/flenDist.txt
md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
- path: output/salmon/test/quant.genes.sf
md5sum: eb3e7b44801a0b3af07c25963927e20d
- path: output/salmon/salmon/ref_indexing.log
md5sum: 1f824b721361da702b5b1b1c3b02be49
- path: output/salmon/salmon/refseq.bin
md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
- path: output/salmon/salmon/versionInfo.json
md5sum: 204865f645102587c4953fccb256797c
- path: output/salmon/salmon/complete_ref_lens.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: output/salmon/salmon/mphf.bin
md5sum: 53669a47610e33e031faafd32703b714
- path: output/salmon/salmon/pre_indexing.log
md5sum: 68f309b5557feb35829b9715b0afad39
- path: output/salmon/salmon/ctable.bin
md5sum: 79c06180158c7ee44fab6672c2b27fbb
- path: output/salmon/salmon/duplicate_clusters.tsv
md5sum: 51b5292e3a874119c0e1aa566e95d70c
- path: output/salmon/salmon/reflengths.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: output/salmon/salmon/info.json
md5sum: 61ff4d3471134c280668355ddd39e99f
- path: output/salmon/salmon/refAccumLengths.bin
md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
- path: output/salmon/salmon/ctg_offsets.bin
md5sum: 27a76542337df436436e66017f66dd25
- path: output/salmon/salmon/rank.bin
md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
- path: output/salmon/salmon/pos.bin
md5sum: 3b2d741929d6842e7818fcaa16f01bdc
- path: output/salmon/salmon/seq.bin
md5sum: 196b06f78c8aa6aa960eb5921288d0f4
- name: salmon quant single-end
command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_se -c tests/config/nextflow.config
tags:
- salmon
- salmon_quant
- salmon_quant_se
files:
- path: ./output/salmon/test/cmd_info.json
md5sum: d95f9bd2287a55fa44bbd9b9d4c4ff8a
- path: ./output/salmon/test/quant.sf
md5sum: b08095ac70f89efc3146cdf488d0eb73
- path: ./output/salmon/test/lib_format_counts.json
md5sum: aca0a40187eb407b1b8fc85c01284583
- path: ./output/salmon/test/logs/salmon_quant.log
md5sum: 7a41329e3b6cd24d86b8fe13a420d9e8
- path: ./output/salmon/test/cmd_info.json
md5sum: d95f9bd2287a55fa44bbd9b9d4c4ff8a
- path: ./output/salmon/test/quant.sf
md5sum: b08095ac70f89efc3146cdf488d0eb73
- path: ./output/salmon/test/lib_format_counts.json
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Reference in a new issue Copy permalink