mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
18 lines
342 B
Text
18 lines
342 B
Text
|
process {
|
||
|
|
||
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
||
|
|
||
|
withName: UMITOOLS_EXTRACT {
|
||
|
ext.args = '--bc-pattern="NNNN"'
|
||
|
}
|
||
|
|
||
|
withName: UMITOOLS_DEDUP {
|
||
|
ext.args = ''
|
||
|
ext.prefix = 'dedup'
|
||
|
}
|
||
|
|
||
|
withName: BWA_MEM {
|
||
|
ext.args2 = ''
|
||
|
}
|
||
|
}
|