nf-core_modules/modules/miniasm/meta.yml

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name: miniasm
description: A very fast OLC-based de novo assembler for noisy long reads
keywords:
- assembly
- pacbio
- nanopore
tools:
- miniasm:
description: Ultrafast de novo assembly for long noisy reads (though having no consensus step)
homepage: https://github.com/lh3/miniasm
documentation: https://github.com/lh3/miniasm
tool_dev_url: https://github.com/lh3/miniasm
doi: "10.1093/bioinformatics/btw152"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: List of input PacBio/ONT FastQ files.
pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
- paf:
type: file
description: Alignment in PAF format
pattern: "*{.paf,.paf.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- gfa:
type: file
description: Assembly graph
pattern: "*.gfa.gz"
- assembly:
type: file
description: Genome assembly
pattern: "*.fasta.gz"
authors:
- "@avantonder"