2021-01-29 15:14:33 +00:00
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- name: quast_ref
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2021-02-02 21:30:59 +00:00
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command: nextflow run ./tests/software/quast -entry test_quast_ref -c ./tests/config/nextflow.config
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2021-01-29 15:14:33 +00:00
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tags:
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- quast
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- quast_reference
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files:
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/basic_stats/NGx_plot.pdf
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords.filtered
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md5sum: ec9191d0acb5d5bce56b4842551a8598
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/aligned_stats/NGAx_plot.pdf
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- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
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md5sum: c42838b1553759fb0460a9854e39da36
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- path: ./output/quast/report.tsv
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md5sum: b203a9d2c995bd66552eeb5cb0a98762
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- path: ./output/quast/quast/report.tex
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md5sum: 8168f197dfb2f781accdefaa0d90fc87
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- path: ./output/quast/quast/contigs_reports/misassemblies_frcurve_plot.pdf
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- path: ./output/quast/quast/transposed_report.tex
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md5sum: 0b8fd00649a5758024c8093d5919f71c
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords
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md5sum: dda3fc0addc41ecc0d5183dee6f95886
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- path: ./output/quast/quast/transposed_report.txt
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2021-02-01 12:36:25 +00:00
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md5sum: 73216314e65ef91c24422d5bdd0795e4
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- path: ./output/quast/quast/report.html
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- path: ./output/quast/quast/report.pdf
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- path: ./output/quast/quast/contigs_reports/all_alignments_GCA_011545545-1_ASM1154554v1_cds_from_genomic.tsv
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md5sum: c247152eb82b361106492642fd796e2c
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.used_snps.gz
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md5sum: 7b1db1b433cd95243a949bcb72e7e3a6
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- path: ./output/quast/quast/contigs_reports/unaligned_report.tex
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md5sum: 48562e30903fcf33946e13b602b0e324
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.sf
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.txt
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md5sum: 53c481fe8b3ef18280ea86cbded78b31
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.mis_contigs.info
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: ./output/quast/quast/contigs_reports/unaligned_report.tsv
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md5sum: 769f2d9d7deb5e7a63e238d8ba0cfe13
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_cds_from_genomic_GC_content_plot.pdf
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/genome_stats/features_cumulative_plot.pdf
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- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tex
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md5sum: 85614257e0bb62ac750f7872886b2fbf
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- path: ./output/quast/quast/quast.log
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.tsv
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md5sum: 33144f8d064782864e8400e3a08b2a3a
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned.info
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md5sum: a8505cf206bf53ca369f7e3073fee587
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- path: ./output/quast/quast/genome_stats/GCA_011545545-1_ASM1154554v1_cds_from_genomic_genomic_features_any.txt
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md5sum: 307b3bb1f42fc2f11a60a2e9846021d7
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- path: ./output/quast/quast/icarus.html
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md5sum: 6e57f5f7d07528496fc2f35b449951fe
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tsv
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md5sum: 4d24cc0da823a100a076aef36f9fd75e
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- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stderr
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- path: ./output/quast/quast/aligned_stats/cumulative_plot.pdf
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- path: ./output/quast/quast/genome_stats/genome_info.txt
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md5sum: bc3df27ad7356c045c9a108f9d4bcfbe
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- path: ./output/quast/quast/genome_stats/features_frcurve_plot.pdf
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.txt
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md5sum: 0784e0d31e9f2a165730cc0029023427
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.unaligned
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/contigs_reports/contigs_report_GCA_011545545-1_ASM1154554v1_cds_from_genomic.stdout
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- path: ./output/quast/quast/contigs_reports/unaligned_report.txt
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md5sum: c1c26797084ea743ec5a224ab97adb1f
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- path: ./output/quast/quast/genome_stats/GCA_011545545-1_ASM1154554v1_cds_from_genomic_gaps.txt
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md5sum: c52381f09ea40b6141be5232494727b6
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- path: ./output/quast/quast/icarus_viewers/alignment_viewer.html
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md5sum: ad5176f21d3c4809a9a8f9c27bb8d70a
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.tex
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md5sum: ffe19cf4d5332952f0627e9cd82e3375
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- path: ./output/quast/quast/contigs_reports/minimap_output/GCA_011545545-1_ASM1154554v1_cds_from_genomic.coords_tmp
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md5sum: ce66eaeb99fdc11e4d50efadc1816e04
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- path: ./output/quast/quast/basic_stats/gc.icarus.txt
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md5sum: b3a770802ff9b2dd4ee8e47bddb2df3e
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- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
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- path: ./output/quast/quast/transposed_report.tsv
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md5sum: 1754bd6c6fa8a0172a342a48dd3ca505
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/report.txt
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md5sum: e334b3390a5028cbf88fe4ccab2b6499
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- path: ./output/quast/quast/contigs_reports/misassemblies_plot.pdf
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- path: ./output/quast/quast/report.tsv
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md5sum: b203a9d2c995bd66552eeb5cb0a98762
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- path: ./output/quast/quast/contigs_reports/GCA_011545545_1_ASM1154554v1_cds_from_genomic.mis_contigs.fa
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: ./output/quast/quast/aligned_stats/NAx_plot.pdf
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2021-01-29 15:14:33 +00:00
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- name: quast_noref
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2021-02-02 21:30:59 +00:00
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command: nextflow run ./tests/software/quast -entry test_quast_noref -c ./tests/config/nextflow.config
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2021-01-29 15:14:33 +00:00
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tags:
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- quast
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- quast_no_reference
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files:
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
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md5sum: d2680b8083139e62baf7af0f852d52b8
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- path: ./output/quast/quast/transposed_report.txt
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md5sum: b6b126e9dcfd8c8e7bd36dff9220caf0
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- path: ./output/quast/report.tsv
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md5sum: 55d2938fcdb678e97d441cf32b9c740e
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- path: ./output/quast/quast/icarus.html
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md5sum: dcb11b4c7b6c21190c1344c46288d3f4
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- path: ./output/quast/quast/report.txt
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md5sum: c8e87f40e888a0395be04f78532d9deb
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/transposed_report.tsv
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2021-02-01 12:36:25 +00:00
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md5sum: 27b6c755be5d70e3eed22e1bf3f68ce5
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/quast.log
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2021-02-01 12:36:25 +00:00
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- path: ./output/quast/quast/report.tex
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md5sum: 69c31172ae6257663b22bb192ba84682
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- path: ./output/quast/quast/report.pdf
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- path: ./output/quast/quast/basic_stats/GCA_011545545.1_ASM1154554v1_cds_from_genomic_GC_content_plot.pdf
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
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- path: ./output/quast/quast/report.tsv
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2021-02-01 12:36:25 +00:00
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md5sum: 55d2938fcdb678e97d441cf32b9c740e
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- path: ./output/quast/quast/transposed_report.tex
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md5sum: 213fb615afe21904e52d670e602c1f62
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- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
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- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
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2021-01-29 15:14:33 +00:00
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- path: ./output/quast/quast/report.html
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