2020-11-25 02:56:03 +00:00
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- name: Run trimgalore single-end test workflow
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2021-02-02 21:30:59 +00:00
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command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_single_end -c tests/config/nextflow.config
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2020-11-25 02:56:03 +00:00
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tags:
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- trimgalore
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files:
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# These can't be md5'd reliably
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# TODO Test for includes
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- path: output/test_single_end/test.fastq.gz_trimming_report.txt
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- path: output/test_single_end/test_trimmed.fq.gz
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- name: Run trimgalore paired-end test workflow
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2021-02-02 21:30:59 +00:00
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command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config
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2020-11-25 02:56:03 +00:00
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tags:
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- trimgalore
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files:
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# These can't be md5'd reliably
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# TODO Test for includes
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- path: output/test_paired_end/test_1.fastq.gz_trimming_report.txt
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- path: output/test_paired_end/test_1_val_1.fq.gz
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- path: output/test_paired_end/test_2.fastq.gz_trimming_report.txt
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- path: output/test_paired_end/test_2_val_2.fq.gz
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