nf-core_modules/modules/hmmcopy/readcounter/meta.yml

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name: hmmcopy_readcounter
description: readCounter function from HMMcopy utilities, used to generate read in windows
keywords:
- hmmcopy
- readcounter
- cnv
tools:
- hmmcopy:
description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
homepage: https://github.com/shahcompbio/hmmcopy_utils
documentation: https://github.com/shahcompbio/hmmcopy_utils
tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
doi: ""
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- wig:
type: file
description: A wig file with the number of reads lying within each window in each chromosome
pattern: "*.wig"
authors:
- "@sppearce"