mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 20:08:17 +00:00
39 lines
1.8 KiB
YAML
39 lines
1.8 KiB
YAML
|
- name: panaroo run test_panaroo_run
|
||
|
|
command: nextflow run tests/modules/panaroo/run -entry test_panaroo_run -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- panaroo/run
|
||
|
|
- panaroo
|
||
|
|
files:
|
||
|
|
- path: output/panaroo/results/combined_DNA_CDS.fasta
|
||
|
|
md5sum: 92bd4f6b9c84c84c0989d77d2558b7d1
|
||
|
|
- path: output/panaroo/results/combined_protein_CDS.fasta
|
||
|
|
md5sum: 7a5636c4f2abc190f5dd4dfbb1da7034
|
||
|
|
- path: output/panaroo/results/combined_protein_cdhit_out.txt
|
||
|
|
md5sum: 2164b81606712b53af2198b4d50eed08
|
||
|
|
- path: output/panaroo/results/combined_protein_cdhit_out.txt.clstr
|
||
|
|
md5sum: aaa9fc2b797c932b6d9ff2df640113f1
|
||
|
|
- path: output/panaroo/results/core_alignment_header.embl
|
||
|
|
contains: ["DNA", "feature", "locus_tag"]
|
||
|
|
- path: output/panaroo/results/core_gene_alignment.aln
|
||
|
|
contains: ["test1", "test2", "test3"]
|
||
|
|
- path: output/panaroo/results/final_graph.gml
|
||
|
|
contains: ["graph", "isolateNames", "test3"]
|
||
|
|
- path: output/panaroo/results/gene_data.csv
|
||
|
|
md5sum: 45df2d26ac81754b858c0e4757e834b2
|
||
|
|
- path: output/panaroo/results/gene_presence_absence.Rtab
|
||
|
|
md5sum: 9efbed5df121dc0c4fbb58869b65c3e4
|
||
|
|
- path: output/panaroo/results/gene_presence_absence.csv
|
||
|
|
contains: ["Gene", "unique", "test3"]
|
||
|
|
- path: output/panaroo/results/gene_presence_absence_roary.csv
|
||
|
|
contains: ["Gene", "Max", "Fragment"]
|
||
|
|
- path: output/panaroo/results/pan_genome_reference.fa
|
||
|
|
md5sum: d0b03cdfaab8965d86cb1045db3c2d20
|
||
|
|
- path: output/panaroo/results/pre_filt_graph.gml
|
||
|
|
contains: ["graph", "node", "id"]
|
||
|
|
- path: output/panaroo/results/struct_presence_absence.Rtab
|
||
|
|
md5sum: 246017db1175f9b1683dfe60cb2e9b5b
|
||
|
|
- path: output/panaroo/results/summary_statistics.txt
|
||
|
|
md5sum: 9c73c416e1758bea06c67b4ec9fd0720
|
||
|
|
- path: output/panaroo/versions.yml
|
||
|
|
md5sum: 909e7b046a8a87319986d34b7328641c
|