2020-12-21 19:06:57 +00:00
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- name: Run bedtools complement test workflow
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_complement -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_complement
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files:
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- path: output/bedtools/test.complement.bed
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md5sum: 55a43973abb1a08ac57290ff44f6c502
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- name: Run bedtools genomecov test workflow
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_genomecov -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_genomecov
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files:
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- path: output/bedtools/test.bed
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2021-01-08 19:22:07 +00:00
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md5sum: 8c8238ca3cdac7a0e650ade95ee941f4
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2020-12-21 19:06:57 +00:00
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- name: Run bedtools intersect test workflow
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_intersect -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_intersect
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files:
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- path: output/bedtools/test.intersect.bed
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md5sum: cc1bb317886e7df0a942b56f8a320d9c
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2021-01-08 18:21:55 +00:00
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2020-12-21 19:06:57 +00:00
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- name: Run bedtools sort test workflow
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_sort -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_sort
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files:
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- path: output/bedtools/test.sort.bed
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md5sum: 4279202e33fcce3d19f420f1b27fddee
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2021-01-08 19:22:07 +00:00
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# TODO link to sort module
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2020-12-21 19:06:57 +00:00
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- name: Run bedtools merge test workflow
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_merge -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_merge
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files:
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- path: output/bedtools/test.merged.bed
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md5sum: 13e5a3b254fac35fe0da0c92cbaf1761
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- name: Run bedtools slop test workflow (symmetrical)
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_slop_symmetrical -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_slop
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files:
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- path: output/bedtools/test.slop.bed
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md5sum: 4279202e33fcce3d19f420f1b27fddee
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- name: Run bedtools slop test workflow (asymmetrical)
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command: nextflow run ./tests/software/bedtools/ -profile docker -entry test_bedtools_slop_asymmetrical -c tests/config/nextflow.config
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tags:
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- bedtools
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- bedtools_slop
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files:
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- path: output/bedtools/test.slop.bed
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md5sum: 4279202e33fcce3d19f420f1b27fddee
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