nf-core_modules/tests/software/bismark/summary/test.yml

- name: Run bismark summary test workflow
  command: nextflow run ./tests/software/bismark/summary -entry test_bismark_summary -c tests/config/nextflow.config
  tags:
    - bismark
    - bismark/summary
  files:
    - path: output/bismark/bismark_summary_report.html
    - path: output/bismark/bismark_summary_report.txt
      md5sum: fdfadd5399c4e7b2108da100e72036eb
add bismark/summary (#295) * add bismark/align module * bismark/align: add tests * bismark/align: update meta.yml * bismark/align: skip checksum for alignment logs they contain timestamps * bismark/align: restore correct checksum caused some mixup in the last commit * bismark/align: add genome_preparation to filters * Fix conda version pin * change options to be a global var * remove params from meta.yml * add bismark/summary * remove md5sum check for bismark_summary_report.html it contains a timestamp * fix tests * update meta.yml * remove mysterious index files 2021-03-22 13:58:54 +00:00			`- name: Run bismark summary test workflow`
			`command: nextflow run ./tests/software/bismark/summary -entry test_bismark_summary -c tests/config/nextflow.config`
			`tags:`
			`- bismark`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- bismark/summary`
add bismark/summary (#295) * add bismark/align module * bismark/align: add tests * bismark/align: update meta.yml * bismark/align: skip checksum for alignment logs they contain timestamps * bismark/align: restore correct checksum caused some mixup in the last commit * bismark/align: add genome_preparation to filters * Fix conda version pin * change options to be a global var * remove params from meta.yml * add bismark/summary * remove md5sum check for bismark_summary_report.html it contains a timestamp * fix tests * update meta.yml * remove mysterious index files 2021-03-22 13:58:54 +00:00			`files:`
			`- path: output/bismark/bismark_summary_report.html`
			`- path: output/bismark/bismark_summary_report.txt`
Fix 459 (#534) * Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map. 2021-06-14 11:24:59 +00:00			`md5sum: fdfadd5399c4e7b2108da100e72036eb`