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16 lines
607 B
Text
16 lines
607 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DAMAGEPROFILER } from '../../../software/damageprofiler/main.nf' addParams( options: [:] )
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workflow test_damageprofiler {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ] ]
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
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DAMAGEPROFILER ( input, fasta, fai )
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}
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