mirror of
https://github.com/MillironX/nf-core_modules.git
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124 lines
6.4 KiB
YAML
124 lines
6.4 KiB
YAML
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- name: metaphlan3 test_metaphlan3_single_end
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command: nextflow run tests/software/metaphlan3 -entry test_metaphlan3_single_end -c tests/config/nextflow.config
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tags:
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- metaphlan3
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files:
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- path: output/metaphlan3/test.biom
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contains:
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- '"format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","generated_by"'
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- path: output/metaphlan3/test.bowtie2out.txt
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md5sum: ef46a9c6a8ce9cae26fbfd5527116fd5
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- path: output/metaphlan3/test_profile.txt
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md5sum: 72d40ee2304c162f3c165e1e578ed152
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- path: output/untar/metaphlan_database/mpa_latest
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md5sum: b1337362f607000384563a56a6ff4790
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.1.bt2
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md5sum: d52a98fe273742ade7c744b819a7c5c1
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.2.bt2
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md5sum: b14cc7faf3a4fae792160c917aebfe03
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.3.bt2
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md5sum: 1bca5df879f2c6fad0c54984d0651bfb
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.4.bt2
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md5sum: 249ee1c672d52d50cee41cb94b6adc42
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.fasta
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md5sum: d3efe201c9eb449e877ead36656abf5f
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.pkl
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md5sum: b208bb15eaef50d91cc7d5e35a1518ee
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.1.bt2
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md5sum: ed05be063280e8629193e52903b07591
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.2.bt2
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md5sum: 1ca16b905abf657b88ca2bc12e7ad404
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- name: metaphlan3 test_metaphlan3_paired_end
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command: nextflow run tests/software/metaphlan3 -entry test_metaphlan3_paired_end -c tests/config/nextflow.config
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tags:
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- metaphlan3
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files:
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- path: output/metaphlan3/test.biom
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contains:
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- '"format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","generated_by"'
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- path: output/metaphlan3/test.bowtie2out.txt
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md5sum: ce11486fcc0e68fe7152867a3634e09a
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- path: output/metaphlan3/test_profile.txt
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md5sum: fcf99fec08ee00db6ef2c12fb93bc14b
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- path: output/untar/metaphlan_database/mpa_latest
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md5sum: b1337362f607000384563a56a6ff4790
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.1.bt2
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md5sum: d52a98fe273742ade7c744b819a7c5c1
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.2.bt2
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md5sum: b14cc7faf3a4fae792160c917aebfe03
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.3.bt2
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md5sum: 1bca5df879f2c6fad0c54984d0651bfb
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.4.bt2
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md5sum: 249ee1c672d52d50cee41cb94b6adc42
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.fasta
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md5sum: d3efe201c9eb449e877ead36656abf5f
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.pkl
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md5sum: b208bb15eaef50d91cc7d5e35a1518ee
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.1.bt2
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md5sum: ed05be063280e8629193e52903b07591
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.2.bt2
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md5sum: 1ca16b905abf657b88ca2bc12e7ad404
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- name: metaphlan3 test_metaphlan3_sam
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command: nextflow run tests/software/metaphlan3 -entry test_metaphlan3_sam -c tests/config/nextflow.config
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tags:
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- metaphlan3
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files:
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- path: output/metaphlan3/test.biom
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contains:
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- '"format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","generated_by"'
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- path: output/metaphlan3/test_profile.txt
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md5sum: e050d49f7df8a23617880ef9ed7745a0
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- path: output/samtools/test.sam.bam
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md5sum: 1d5be3c91979ead358e3980e3e7c9acf
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- path: output/untar/metaphlan_database/mpa_latest
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md5sum: b1337362f607000384563a56a6ff4790
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.1.bt2
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md5sum: d52a98fe273742ade7c744b819a7c5c1
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.2.bt2
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md5sum: b14cc7faf3a4fae792160c917aebfe03
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.3.bt2
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md5sum: 1bca5df879f2c6fad0c54984d0651bfb
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.4.bt2
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md5sum: 249ee1c672d52d50cee41cb94b6adc42
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.fasta
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md5sum: d3efe201c9eb449e877ead36656abf5f
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.pkl
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md5sum: b208bb15eaef50d91cc7d5e35a1518ee
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.1.bt2
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md5sum: ed05be063280e8629193e52903b07591
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.2.bt2
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md5sum: 1ca16b905abf657b88ca2bc12e7ad404
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- name: metaphlan3 test_metaphlan3_fasta
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command: nextflow run tests/software/metaphlan3 -entry test_metaphlan3_fasta -c tests/config/nextflow.config
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tags:
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- metaphlan3
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files:
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- path: output/metaphlan3/test.biom
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contains:
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- '"format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","generated_by"'
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- path: output/metaphlan3/test.bowtie2out.txt
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md5sum: fece494a410b8328608a11de10af6396
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- path: output/metaphlan3/test_profile.txt
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md5sum: d148c4203e5a9d59f5eea57207e40769
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- path: output/untar/metaphlan_database/mpa_latest
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md5sum: b1337362f607000384563a56a6ff4790
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.1.bt2
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md5sum: d52a98fe273742ade7c744b819a7c5c1
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.2.bt2
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md5sum: b14cc7faf3a4fae792160c917aebfe03
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.3.bt2
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md5sum: 1bca5df879f2c6fad0c54984d0651bfb
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.4.bt2
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md5sum: 249ee1c672d52d50cee41cb94b6adc42
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.fasta
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md5sum: d3efe201c9eb449e877ead36656abf5f
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.pkl
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md5sum: b208bb15eaef50d91cc7d5e35a1518ee
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.1.bt2
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md5sum: ed05be063280e8629193e52903b07591
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- path: output/untar/metaphlan_database/mpa_v30_CHOCOPhlAn_201901.rev.2.bt2
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md5sum: 1ca16b905abf657b88ca2bc12e7ad404
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