nf-core_modules/tests/software/preseq/lcextrap/test.yml

- name: preseq lcextrap single-end
  command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_single_end -c tests/config/nextflow.config
  tags:
    - preseq
    - preseq/lcextrap
  files:
    - path: output/preseq/test.ccurve.txt
      md5sum: 1fa5cdd601079329618f61660bee00de
    - path: output/preseq/test.command.log

- name: preseq lcextrap paired-end
  command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_paired_end -c tests/config/nextflow.config
  tags:
    - preseq
    - preseq/lcextrap
  files:
    - path: output/preseq/test.ccurve.txt
      md5sum: 10e5ea860e87fb6f5dc10f4f20c62040
    - path: output/preseq/test.command.log
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`- name: preseq lcextrap single-end`
Change path to tests 2021-02-03 16:44:56 +00:00			`command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_single_end -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- preseq`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- preseq/lcextrap`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
Fix preseq tests 2021-02-03 17:28:44 +00:00			`- path: output/preseq/test.ccurve.txt`
Update modules required for rnaseq pipeline (#449) * Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests 2021-04-16 07:56:47 +00:00			`md5sum: 1fa5cdd601079329618f61660bee00de`
Fix preseq tests 2021-02-03 17:28:44 +00:00			`- path: output/preseq/test.command.log`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00
			`- name: preseq lcextrap paired-end`
Change path to tests 2021-02-03 16:44:56 +00:00			`command: nextflow run ./tests/software/preseq/lcextrap -entry test_preseq_paired_end -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- preseq`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- preseq/lcextrap`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
Fix preseq tests 2021-02-03 17:28:44 +00:00			`- path: output/preseq/test.ccurve.txt`
Update modules required for rnaseq pipeline (#449) * Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests 2021-04-16 07:56:47 +00:00			`md5sum: 10e5ea860e87fb6f5dc10f4f20c62040`
Fix preseq tests 2021-02-03 17:28:44 +00:00			`- path: output/preseq/test.command.log`