2021-09-23 08:13:04 +00:00
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name: diamond_blastp
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description: Queries a DIAMOND database using blastp mode
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keywords:
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- fasta
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- diamond
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- blastp
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- DNA sequence
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tools:
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- diamond:
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description: Accelerated BLAST compatible local sequence aligner
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homepage: https://github.com/bbuchfink/diamond
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documentation: https://github.com/bbuchfink/diamond/wiki
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tool_dev_url: https://github.com/bbuchfink/diamond
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doi: "doi:10.1038/s41592-021-01101-x"
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2022-02-15 11:15:27 +00:00
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licence: ["GPL v3.0"]
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2021-09-23 08:13:04 +00:00
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input:
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- meta:
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2022-02-15 11:15:27 +00:00
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2021-09-23 08:13:04 +00:00
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- fasta:
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2022-02-15 11:15:27 +00:00
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type: file
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description: Input fasta file containing query sequences
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pattern: "*.{fa,fasta}"
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2021-09-23 08:13:04 +00:00
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- db:
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2022-02-15 11:15:27 +00:00
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type: directory
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description: Directory containing the protein blast database
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pattern: "*"
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2021-09-23 08:13:04 +00:00
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output:
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- txt:
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2022-02-15 11:15:27 +00:00
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type: file
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description: File containing blastp hits
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pattern: "*.{blastp.txt}"
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2021-10-03 07:20:26 +00:00
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- versions:
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2022-02-15 11:15:27 +00:00
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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2021-09-23 08:13:04 +00:00
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authors:
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- "@spficklin"
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