nf-core_modules/modules/pasty/meta.yml

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name: "pasty"
description: Serogroup Pseudomonas aeruginosa assemblies
keywords:
- bacteria
- serogroup
- fasta
- assembly
tools:
- "pasty":
description: "A tool for in silico serogrouping of Pseudomonas aeruginosa isolates"
homepage: "https://github.com/rpetit3/pasty"
documentation: "https://github.com/rpetit3/pasty"
tool_dev_url: "https://github.com/rpetit3/pasty"
doi: ""
licence: "['Apache-2.0']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: An assembly in FASTA format
pattern: "*.{fasta,fasta.gz,fna,fna.gz,fa,fa.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- tsv:
type: file
description: A tab-delimited file with the predicted serogroup
pattern: "*.tsv"
- blast:
type: file
description: A tab-delimited file of all blast hits
pattern: "*.blastn.tsv"
- details:
type: file
description: A tab-delimited file with details for each serogroup
pattern: "*.details.tsv"
authors:
- "@rpetit3"