nf-core_modules/modules/samtools/fasta/meta.yml

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2022-09-29 07:10:44 +00:00
name: "samtools_fasta"
description: Converts a SAM/BAM/CRAM file to FASTA
keywords:
- bam
- sam
- cram
- fasta
tools:
- "samtools":
description: "Tools for dealing with SAM, BAM and CRAM files"
homepage: "http://www.htslib.org"
documentation: "https://www.htslib.org/doc/samtools-fasta.html"
tool_dev_url: "https://github.com/samtools/samtools"
doi: "10.1093/bioinformatics/btp352"
licence: "['MIT']"
input:
# Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
output:
#Only when we have meta
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- fasta:
type: file
description: compressed FASTA file
pattern: "*.fasta.gz"
authors:
- "@priyanka-surana"