nf-core_modules/modules/trimmomatic/meta.yml

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name: "trimmomatic"
description: Performs quality and adapter trimming on paired end and single end reads
keywords:
- trimming
- adapter trimming
- quality trimming
tools:
- "trimmomatic":
description: "A flexible read trimming tool for Illumina NGS data"
homepage: "http://www.usadellab.org/cms/?page=trimmomatic"
documentation: "https://github.com/usadellab/Trimmomatic"
tool_dev_url: "None"
doi: "10.1093/bioinformatics/btu170"
licence: "['GPL v3']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
Input FastQ files of size 1 or 2 for single-end and paired-end data, respectively.
pattern: "*.fastq.gz"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- trimmed_reads:
type: file
description: The trimmed/modified paired end fastq reads
pattern: "*.paired.trim*.fastq.gz"
- unpaired_reads:
type: file
description: The trimmed/modified unpaired end fastq reads
pattern: "*.unpaired.trim_*.fastq.gz"
- log:
type: file
description: trimmomatic log file
pattern: "*.log"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@alyssa-ab"