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21 lines
753 B
Text
21 lines
753 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMER_HMMALIGN } from '../../../../modules/hmmer/hmmalign/main.nf'
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include { HMMER_ESLALIMASK as RFMASK } from '../../../../modules/hmmer/eslalimask/main.nf'
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workflow test_hmmer_rfmask {
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input = [
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[ id:'test' ], // meta map
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/e_coli_k12_16s.fna.gz') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
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]
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hmm = file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/bac.16S_rRNA.hmm.gz')
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HMMER_HMMALIGN ( input, hmm )
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RFMASK ( HMMER_HMMALIGN.out.sthlm, [] )
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}
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