nf-core_modules/tests/modules/gtdbtk/classifywf/test.yml

- name: gtdbtk classifywf
  command: nextflow run ./tests/modules/gtdbtk/classifywf -entry test_gtdbtk_classifywf -c tests/config/nextflow.config -stub-run
  tags:
    - gtdbtk
    - gtdbtk/classifywf
  files:
    - path: output/gtdbtk/gtdbtk.SPADES-test.stub.summary.tsv
      md5sum: d41d8cd98f00b204e9800998ecf8427e
Add gtdbtk/classifywf module (#765) * initial commit [ci skip] * reuse the modules code from nf-core/mag [ci skip] * add contextual information for the module [ci skip] * add stubs to avoid downloading db [ci skip] * trigger test * iterate on tests [ci skip] * itereate tests [ci skip] * add bins [ci skip] * fix stubs [ci skip] * interation on tests with stubs [ci skip] * use the existing pattern and fasta for input * accomodate the new version file format * use variable for the stub [ci skip] * update the versions file in meta.yml * Accomodate code review regarding publishDir function [ci skip] Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * remove extra newline * use bioconda channel * update the description for filtered file * Apply suggestions from code review * Update main.nf * Update main.nf * Update modules/gtdbtk/classifywf/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-10-05 20:23:01 +00:00			`- name: gtdbtk classifywf`
			`command: nextflow run ./tests/modules/gtdbtk/classifywf -entry test_gtdbtk_classifywf -c tests/config/nextflow.config -stub-run`
			`tags:`
			`- gtdbtk`
			`- gtdbtk/classifywf`
			`files:`
			`- path: output/gtdbtk/gtdbtk.SPADES-test.stub.summary.tsv`
			`md5sum: d41d8cd98f00b204e9800998ecf8427e`