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nf-core_modules/tests/modules/subread/featurecounts/test.yml

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Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
- name: subread featurecounts test_subread_featurecounts_forward
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/subread/featurecounts -entry test_subread_featurecounts_forward -c tests/config/nextflow.config
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
tags:
- subread
Update and check tests are running for all modules (#420) * Fixes for PR 371 * Fix tags * Add md5sum * Add md5sums for stringtie * Fix tests for modules where subtool = build * Fix pytest_software name conflicts * Change _ to / in test.yml tags * Nope...that didnt work * Fix sequenzautils/bam2seqz tests
2021-04-09 12:47:05 +00:00
- subread/featurecounts
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
files:
- path: output/subread/test.featureCounts.txt
fix more ver yml (#757) * Fix featurecounts * whitespace change to trigger CI on yara/mapper * update test yaml
2021-09-28 19:25:10 +00:00
md5sum: 0012df4c0a0e47eec1440017ab34f75f
- path: output/subread/test.featureCounts.txt.summary
md5sum: 8f602ff9a8ef467af43294e80b367cdf
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
- name: subread featurecounts test_subread_featurecounts_reverse
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/subread/featurecounts -entry test_subread_featurecounts_reverse -c tests/config/nextflow.config
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
tags:
- subread
Update and check tests are running for all modules (#420) * Fixes for PR 371 * Fix tags * Add md5sum * Add md5sums for stringtie * Fix tests for modules where subtool = build * Fix pytest_software name conflicts * Change _ to / in test.yml tags * Nope...that didnt work * Fix sequenzautils/bam2seqz tests
2021-04-09 12:47:05 +00:00
- subread/featurecounts
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
files:
- path: output/subread/test.featureCounts.txt
fix more ver yml (#757) * Fix featurecounts * whitespace change to trigger CI on yara/mapper * update test yaml
2021-09-28 19:25:10 +00:00
md5sum: 8175816b8260ed444d59232bd7e7120b
- path: output/subread/test.featureCounts.txt.summary
md5sum: 7cfa30ad678b9bc1bc63afbb0281547b
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
- name: subread featurecounts test_subread_featurecounts_unstranded
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/subread/featurecounts -entry test_subread_featurecounts_unstranded -c tests/config/nextflow.config
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
tags:
- subread
Update and check tests are running for all modules (#420) * Fixes for PR 371 * Fix tags * Add md5sum * Add md5sums for stringtie * Fix tests for modules where subtool = build * Fix pytest_software name conflicts * Change _ to / in test.yml tags * Nope...that didnt work * Fix sequenzautils/bam2seqz tests
2021-04-09 12:47:05 +00:00
- subread/featurecounts
Add tests for subread #106 (#393) * inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
2021-04-01 19:02:36 +00:00
files:
- path: output/subread/test.featureCounts.txt
fix more ver yml (#757) * Fix featurecounts * whitespace change to trigger CI on yara/mapper * update test yaml
2021-09-28 19:25:10 +00:00
md5sum: 3307d31b44a5d6bb3389786bb8f4e91f
- path: output/subread/test.featureCounts.txt.summary
md5sum: 23164b79f9f23f11c82820db61a35560
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