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https://github.com/MillironX/nf-core_modules.git
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23 lines
1.2 KiB
YAML
23 lines
1.2 KiB
YAML
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- name: gatk4 leftalignandtrimvariants test_gatk4_leftalignandtrimvariants_interval
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command: nextflow run ./tests/modules/gatk4/leftalignandtrimvariants -entry test_gatk4_leftalignandtrimvariants_interval -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/leftalignandtrimvariants/nextflow.config
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tags:
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- gatk4
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- gatk4/leftalignandtrimvariants
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files:
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- path: output/gatk4/test.normalised.vcf.gz
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contains:
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- "#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT"
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- path: output/gatk4/test.normalised.vcf.gz.tbi
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- name: gatk4 leftalignandtrimvariants test_gatk4_leftalignandtrimvariants_no_interval
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command: nextflow run ./tests/modules/gatk4/leftalignandtrimvariants -entry test_gatk4_leftalignandtrimvariants_no_interval -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/leftalignandtrimvariants/nextflow.config
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tags:
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- gatk4
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- gatk4/leftalignandtrimvariants
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files:
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- path: output/gatk4/test.normalised.vcf.gz
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contains:
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- "#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT"
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- "MT192765.1\t10502\t.\tTAGATTATGACTGTGTCTCTTTTTGTTACATGCACCA\tTAGAT"
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- path: output/gatk4/test.normalised.vcf.gz.tbi
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