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40 lines
1.4 KiB
Text
40 lines
1.4 KiB
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HAPPY } from '../../../modules/happy/main.nf'
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workflow test_happy_vcf {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_rnaseq_vcf'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_genome21_indels_vcf_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)
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]
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fasta = Channel.value([
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file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
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])
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HAPPY ( input, fasta )
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}
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workflow test_happy_gvcf {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_rnaseq_vcf'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['genome_bed'], checkIfExists: true)
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]
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fasta = Channel.value([
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file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
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])
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HAPPY ( input, fasta )
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}
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