2021-10-29 08:01:23 +00:00
|
|
|
name: assemblyscan
|
|
|
|
description: Assembly summary statistics in JSON format
|
|
|
|
keywords:
|
|
|
|
- assembly
|
|
|
|
- statistics
|
|
|
|
tools:
|
|
|
|
- assemblyscan:
|
|
|
|
description: Assembly summary statistics in JSON format
|
|
|
|
homepage: https://github.com/rpetit3/assembly-scan
|
|
|
|
documentation: https://github.com/rpetit3/assembly-scan
|
|
|
|
tool_dev_url: https://github.com/rpetit3/assembly-scan
|
|
|
|
doi: ""
|
2022-02-15 11:15:27 +00:00
|
|
|
licence: ["MIT"]
|
2021-10-29 08:01:23 +00:00
|
|
|
|
|
|
|
input:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
- assembly:
|
|
|
|
type: file
|
|
|
|
description: FASTA file for a given assembly
|
|
|
|
pattern: "*.fasta"
|
|
|
|
|
|
|
|
output:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
- versions:
|
|
|
|
type: file
|
|
|
|
description: File containing software versions
|
|
|
|
pattern: "versions.yml"
|
|
|
|
- json:
|
|
|
|
type: file
|
|
|
|
description: Assembly statistics in JSON format
|
|
|
|
pattern: "*.json"
|
|
|
|
|
|
|
|
authors:
|
|
|
|
- "@sateeshperi"
|
|
|
|
- "@mjcipriano"
|