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nf-core_modules/tests/modules/bamcmp/nextflow.config

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: BWA_MEM {
ext.prefix = "human"
}
withName: BWA_MEM_COV2 {
ext.prefix = "cov2"
}
withName: SAMTOOLS_SORT {
ext.args = '-n'
ext.prefix = "sorted"
}
withName: SAMTOOLS_SORT_COV2 {
ext.args = '-n'
ext.prefix = "sorted_cov2"
}
withName: BAMCMP {
ext.args = '-s "as"'
}
}