mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
48 lines
1.1 KiB
YAML
48 lines
1.1 KiB
YAML
|
name: "vcf2db"
|
||
|
|
description: A tool to create a Gemini-compatible DB file from an annotated VCF
|
||
|
|
keywords:
|
||
|
|
- vcf2db
|
||
|
|
- vcf
|
||
|
|
- gemini
|
||
|
|
tools:
|
||
|
|
- "vcf2db":
|
||
|
|
description: "Create a gemini-compatible database from a VCF"
|
||
|
|
homepage: "https://github.com/quinlan-lab/vcf2db"
|
||
|
|
documentation: "https://github.com/quinlan-lab/vcf2db"
|
||
|
|
tool_dev_url: "https://github.com/quinlan-lab/vcf2db"
|
||
|
|
doi: ""
|
||
|
|
licence: "['MIT']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: VCF file
|
||
|
|
pattern: "*.vcf.gz"
|
||
|
|
- ped:
|
||
|
|
type: file
|
||
|
|
description: PED file
|
||
|
|
pattern: "*.ped"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- db:
|
||
|
|
type: file
|
||
|
|
description: Gemini-compatible database file
|
||
|
|
pattern: "*.db"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@nvnieuwk"
|