mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 22:23:09 +00:00
28 lines
1 KiB
Text
28 lines
1 KiB
Text
|
process {
|
||
|
|
|
||
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
||
|
|
|
||
|
|
withName: CELLRANGER_MKGTF {
|
||
|
|
ext.args = '--attribute=gene_biotype:protein_coding \
|
||
|
|
--attribute=gene_biotype:lincRNA \
|
||
|
|
--attribute=gene_biotype:antisense \
|
||
|
|
--attribute=gene_biotype:IG_LV_gene \
|
||
|
|
--attribute=gene_biotype:IG_V_gene \
|
||
|
|
--attribute=gene_biotype:IG_V_pseudogene \
|
||
|
|
--attribute=gene_biotype:IG_D_gene \
|
||
|
|
--attribute=gene_biotype:IG_J_gene \
|
||
|
|
--attribute=gene_biotype:IG_J_pseudogene \
|
||
|
|
--attribute=gene_biotype:IG_C_gene \
|
||
|
|
--attribute=gene_biotype:IG_C_pseudogene \
|
||
|
|
--attribute=gene_biotype:TR_V_gene \
|
||
|
|
--attribute=gene_biotype:TR_V_pseudogene \
|
||
|
|
--attribute=gene_biotype:TR_D_gene \
|
||
|
|
--attribute=gene_biotype:TR_J_gene \
|
||
|
|
--attribute=gene_biotype:TR_J_pseudogene \
|
||
|
|
--attribute=gene_biotype:TR_C_gene'
|
||
|
|
|
||
|
|
|
||
|
|
}
|
||
|
|
|
||
|
|
}
|