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15 lines
447 B
Text
15 lines
447 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMCOPY_MAPCOUNTER } from '../../../../modules/hmmcopy/mapcounter/main.nf'
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include { HMMCOPY_GENERATEMAP } from '../../../../modules/hmmcopy/generatemap/main.nf'
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workflow test_hmmcopy_mapcounter {
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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HMMCOPY_GENERATEMAP( fasta )
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HMMCOPY_MAPCOUNTER ( HMMCOPY_GENERATEMAP.out.bigwig )
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}
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