mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
38 lines
1.3 KiB
YAML
38 lines
1.3 KiB
YAML
|
name: rapidnj
|
||
|
|
description: Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments.
|
||
|
|
keywords:
|
||
|
|
- phylogeny
|
||
|
|
- newick
|
||
|
|
- neighbour-joining
|
||
|
|
tools:
|
||
|
|
- rapidnj:
|
||
|
|
description: RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
|
||
|
|
homepage: https://birc.au.dk/software/rapidnj
|
||
|
|
documentation: https://birc.au.dk/software/rapidnj
|
||
|
|
tool_dev_url: https://github.com/somme89/rapidNJ
|
||
|
|
doi: "doi:10.1007/978-3-540-87361-7_10"
|
||
|
|
licence: ['GPL v2']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- alignment:
|
||
|
|
type: file
|
||
|
|
description: A FASTA format multiple sequence alignment file
|
||
|
|
pattern: "*.{fasta,fas,fa,mfa}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- phylogeny:
|
||
|
|
type: file
|
||
|
|
description: A phylogeny in Newick format
|
||
|
|
pattern: "*.{tre}"
|
||
|
|
- stockholm_alignment:
|
||
|
|
type: file
|
||
|
|
description: An alignment in Stockholm format
|
||
|
|
pattern: "*.{sth}"
|
||
|
|
authors:
|
||
|
|
- "@aunderwo"
|
||
|
|
- "@avantonder"
|