nf-core_modules/modules/svdb/query/meta.yml

56 lines
1.3 KiB
YAML
Raw Normal View History

name: svdb_query
description: Query a structural variant database, using a vcf file as query
keywords:
- structural variants
tools:
- svdb:
description: structural variant database software
homepage: https://github.com/J35P312/SVDB
documentation: https://github.com/J35P312/SVDB/blob/master/README.md
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- in_occs:
type: list
description: A list of allele count tags
- in_frqs:
type: list
description: A list of allele frequency tags
- vcf:
type: file
description: query vcf file
pattern: "*.{vcf,vcf.gz}"
- vcf_db:
type: file
description: database vcf file
pattern: "*.{vcf,vcf.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- out_occs:
type: list
description: A list of allele count tags
- out_frqs:
type: list
description: A list of allele frequency tags
- vcf:
type: file
description: Annotated output VCF file
pattern: "*_query.vcf"
authors:
- "@ramprasadn"