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17 lines
594 B
Text
17 lines
594 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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params.read_structure = "+T 12M11S+T"
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include { FGBIO_FASTQTOBAM } from '../../../../modules/fgbio/fastqtobam/main.nf' addParams( options: [:] )
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workflow test_fgbio_fastqtobam {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['homo_sapiens']['illumina']['test_umi_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_umi_2_fastq_gz'], checkIfExists: true) ]
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]
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FGBIO_FASTQTOBAM ( input, "${params.read_structure}" )
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}
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