nf-core_modules/tests/modules/sratools/prefetch/test.yml

- name: sratools prefetch test_sratools_prefetch_with_settings_input
  command: nextflow run ./tests/modules/sratools/prefetch -entry test_sratools_prefetch_with_settings_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/prefetch/nextflow.config
  tags:
    - sratools/prefetch
    - sratools
  files:
    - path: output/sratools/DRR000774/DRR000774.sra
      md5sum: 7647dba20c89c0e3d7ad13842f060eb0
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"

- name: sratools prefetch test_sratools_prefetch_without_settings_input
  command: nextflow run ./tests/modules/sratools/prefetch -entry test_sratools_prefetch_without_settings_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/prefetch/nextflow_mount.config
  tags:
    - sratools/prefetch
    - sratools
  files:
    - path: output/sratools/DRR000774/DRR000774.sra
      md5sum: 7647dba20c89c0e3d7ad13842f060eb0
    - path: output/sratools/versions.yml
      contains:
        - "sratools: 2.11.0"
tests: run prefetch with and without given settings 2022-05-08 14:34:18 +00:00			`- name: sratools prefetch test_sratools_prefetch_with_settings_input`
			`command: nextflow run ./tests/modules/sratools/prefetch -entry test_sratools_prefetch_with_settings_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/prefetch/nextflow.config`
Add a module for sra-tools prefetch (#714) * chore: apply module template * refactor: add NCBI settings to options * docs: complete meta information * feat: add prefetch process * fix: correct bash commands * tests: define the right tests * style: move option definition to satisfy linting * fix: extract version correctly * fix: correct newline issues * refactor: address review comments * Apply suggestions from code review * chore: add retrying via nf-core label * refactor: validate download thoroughly * refactor: remove vdb-config input Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-10-11 21:30:41 +00:00			`tags:`
			`- sratools/prefetch`
			`- sratools`
			`files:`
tests: run prefetch with and without given settings 2022-05-08 14:34:18 +00:00			`- path: output/sratools/DRR000774/DRR000774.sra`
			`md5sum: 7647dba20c89c0e3d7ad13842f060eb0`
			`- path: output/sratools/versions.yml`
			`contains:`
			`- "sratools: 2.11.0"`

			`- name: sratools prefetch test_sratools_prefetch_without_settings_input`
			`command: nextflow run ./tests/modules/sratools/prefetch -entry test_sratools_prefetch_without_settings_input -c ./tests/config/nextflow.config -c ./tests/modules/sratools/prefetch/nextflow_mount.config`
			`tags:`
			`- sratools/prefetch`
			`- sratools`
			`files:`
			`- path: output/sratools/DRR000774/DRR000774.sra`
			`md5sum: 7647dba20c89c0e3d7ad13842f060eb0`
			`- path: output/sratools/versions.yml`
			`contains:`
			`- "sratools: 2.11.0"`