mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
44 lines
1.5 KiB
YAML
44 lines
1.5 KiB
YAML
|
name: "gatk4_composestrtablefile"
|
||
|
|
description: This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.
|
||
|
|
keywords:
|
||
|
|
- gatk4
|
||
|
|
- composestrtablefile
|
||
|
|
tools:
|
||
|
|
- gatk4:
|
||
|
|
description:
|
||
|
|
Genome Analysis Toolkit (GATK4). Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
|
||
|
|
with a primary focus on variant discovery and genotyping. Its powerful processing engine
|
||
|
|
and high-performance computing features make it capable of taking on projects of any size.
|
||
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
||
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us/articles/4405451249819-ComposeSTRTableFile
|
||
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
||
|
|
doi: 10.1158/1538-7445.AM2017-3590
|
||
|
|
licence: ["Apache-2.0"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: FASTA reference file
|
||
|
|
pattern: "*.{fasta,fa}"
|
||
|
|
- fasta_fai:
|
||
|
|
type: file
|
||
|
|
description: index of the FASTA reference file
|
||
|
|
pattern: "*.fai"
|
||
|
|
- dict:
|
||
|
|
type: file
|
||
|
|
description: Sequence dictionary of the FASTA reference file
|
||
|
|
pattern: "*.dict"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- str_table:
|
||
|
|
type: file
|
||
|
|
description: A zipped folder containing the STR table files
|
||
|
|
pattern: "*.zip"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@nvnieuwk"
|