nf-core_modules/tests/software/samtools/mpileup/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
2021-02-03 16:20:02 +00:00
include { SAMTOOLS_MPILEUP } from '../../../../software/samtools/mpileup/main.nf' addParams( options: [:] )
workflow test_samtools_mpileup {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
fasta = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
SAMTOOLS_MPILEUP ( input, fasta )
}