2019-12-05 14:53:38 +00:00
|
|
|
name: Trim Galore!
|
|
|
|
|
description: Trim FastQ files using Trim Galore!
|
|
|
|
|
keywords:
|
|
|
|
|
- trimming
|
|
|
|
|
- adapters
|
|
|
|
|
- sequencing adapters
|
|
|
|
|
tools:
|
|
|
|
|
- fastqc:
|
|
|
|
|
description: |
|
|
|
|
|
A wrapper tool around Cutadapt and FastQC to consistently apply quality
|
|
|
|
|
and adapter trimming to FastQ files, with some extra functionality for
|
|
|
|
|
MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries.
|
|
|
|
|
homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
|
|
|
|
|
documentation: https://github.com/FelixKrueger/TrimGalore/blob/master/Docs/Trim_Galore_User_Guide.md
|
|
|
|
|
input:
|
|
|
|
|
-
|
|
|
|
|
- sample_id:
|
|
|
|
|
type: string
|
|
|
|
|
description: Sample identifier
|
|
|
|
|
- reads:
|
|
|
|
|
type: file
|
|
|
|
|
description: Input FastQ file, or pair of files
|
|
|
|
|
output:
|
|
|
|
|
-
|
|
|
|
|
- sample_id:
|
|
|
|
|
type: string
|
|
|
|
|
description: Sample identifier
|
|
|
|
|
- trimmed_fastq:
|
|
|
|
|
type: file
|
|
|
|
|
description: Trimmed FastQ files
|
|
|
|
|
pattern: *fq.gz
|
|
|
|
|
-
|
|
|
|
|
- report:
|
|
|
|
|
type: file
|
|
|
|
|
description: Trim Galore! trimming report
|
|
|
|
|
pattern: *trimming_report.txt
|
2020-03-16 17:49:39 +00:00
|
|
|
|
2019-12-05 14:53:38 +00:00
|
|
|
authors:
|
2020-03-16 17:49:39 +00:00
|
|
|
-
|
|
|
|
|
- @ewels
|
|
|
|
|
- @FelixKrueger
|
